org.biojava.bio.dp

Class ScoreType.Odds

java.lang.Object

org.biojava.bio.dp.ScoreType.Odds

All Implemented Interfaces:

Serializable, ScoreType

Enclosing interface:

ScoreType

public static class ScoreType.Odds
extends Object
implements ScoreType, Serializable

In this class, calculateScore returns the odds ratio of a symbol being emitted. That is, the ratio of the probability of a Symbol being emitted to it being emitted by the null model.

Author:

Matthew Pocock

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.dp.ScoreType

ScoreType.NullModel, ScoreType.Odds, ScoreType.Probability

Field Summary

Fields inherited from interface org.biojava.bio.dp.ScoreType

NULL_MODEL, ODDS, PROBABILITY

Constructor Summary

Constructors

Constructor and Description
ScoreType.Odds()

Method Summary

Methods

Modifier and Type	Method and Description
double	calculateScore(Distribution dist, Symbol sym) Calculates the score associated with a distribution and a symbol.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ScoreType.Odds

public ScoreType.Odds()

Method Detail

calculateScore

public double calculateScore(Distribution dist,
                    Symbol sym)
                      throws IllegalSymbolException

Description copied from interface: ScoreType

Calculates the score associated with a distribution and a symbol.

Specified by:

calculateScore in interface ScoreType

Throws:

IllegalSymbolException