public class NucleotideImpl extends HetatomImpl implements Group, java.io.Serializable, java.lang.Cloneable
HetatomImpl,
AminoAcidImpl,
Serialized FormHetatomImpl.PerformanceBehavior| Modifier and Type | Field and Description |
|---|---|
static GroupType |
type
this is a "nucleotide", a special occurance of a Hetatom.
|
atoms, chemComp, pdb_flag, pdb_name, performanceBehavior, residueNumber| Constructor and Description |
|---|
NucleotideImpl() |
| Modifier and Type | Method and Description |
|---|---|
Atom |
getO3Prime()
Returns the O3' atom if present, otherwise null
|
Atom |
getO5Prime()
Returns the O5' atom if present, otherwise null
|
Atom |
getP()
Returns the P atom if present, otherwise null
|
GroupType |
getType()
|
java.lang.String |
toString() |
addAltLoc, addAtom, clearAtoms, clone, getAltLocGroup, getAltLocs, getAtom, getAtom, getAtoms, getChain, getChainId, getChemComp, getId, getPDBName, getProperties, getProperty, getResidueNumber, has3D, hasAltLoc, hasAminoAtoms, hasAtom, isWater, iterator, setAtoms, setChain, setChemComp, setId, setPDBFlag, setPDBName, setProperties, setProperty, setResidueNumber, setResidueNumber, size, toSDF, trimToSizeequals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, waitaddAltLoc, addAtom, clearAtoms, clone, getAltLocGroup, getAltLocs, getAtom, getAtom, getAtoms, getChain, getChainId, getChemComp, getPDBName, getProperties, getProperty, getResidueNumber, has3D, hasAltLoc, hasAminoAtoms, hasAtom, isWater, iterator, setAtoms, setChain, setChemComp, setPDBFlag, setPDBName, setProperties, setProperty, setResidueNumber, setResidueNumber, size, toSDF, trimToSizepublic static final GroupType type
public GroupType getType()
HetatomImplgetType in interface GroupgetType in class HetatomImplpublic java.lang.String toString()
toString in class HetatomImplpublic Atom getO3Prime()
public Atom getO5Prime()
public Atom getP()