Uses of Class
org.biojava.nbio.structure.io.mmcif.model.ChemComp
Packages that use ChemComp
Package
Description
Input and Output of mmcif files.
Datamodel objects used for processing mmcif files.
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Uses of ChemComp in org.biojava.nbio.structure
Fields in org.biojava.nbio.structure declared as ChemCompMethods in org.biojava.nbio.structure that return ChemCompModifier and TypeMethodDescriptionGroup.getChemComp()Get the chemical component that closer describes this group.HetatomImpl.getChemComp()Methods in org.biojava.nbio.structure with parameters of type ChemCompModifier and TypeMethodDescriptionvoidGroup.setChemComp(ChemComp cc) Set the Chemical Component that closer describes this group.voidHetatomImpl.setChemComp(ChemComp cc) -
Uses of ChemComp in org.biojava.nbio.structure.io.mmcif
Methods in org.biojava.nbio.structure.io.mmcif that return ChemCompModifier and TypeMethodDescriptionAllChemCompProvider.getChemComp(String recordName) Returns a new instance of a chemical component definition.static ChemCompChemCompGroupFactory.getChemComp(String recordName) ChemCompProvider.getChemComp(String recordName) Returns a new instance of a chemical component definition.ChemicalComponentDictionary.getChemComp(String id) DownloadChemCompProvider.getChemComp(String recordName) Loads the definitions for thisChemCompfrom a local file and instantiates a new object.ReducedChemCompProvider.getChemComp(String recordName) ZipChemCompProvider.getChemComp(String recordName) Get the parent of a component.ChemicalComponentDictionary.getReplaced(String id) ChemicalComponentDictionary.getReplaced(ChemComp c) if ChemComp is replacing another one, get the old version otherwise return the same ChemComp again.ChemicalComponentDictionary.getReplacer(String id) ChemicalComponentDictionary.getReplacer(ChemComp c) if ChemComp is replaced by another one, get the newer version otherwise return the same ChemComp again.Methods in org.biojava.nbio.structure.io.mmcif with parameters of type ChemCompModifier and TypeMethodDescriptionvoidChemicalComponentDictionary.addChemComp(ChemComp comp) add a new component to the dictionarystatic StringChemCompGroupFactory.getOneLetterCode(ChemComp cc) Get the parent of a component.ChemicalComponentDictionary.getReplaced(ChemComp c) if ChemComp is replacing another one, get the old version otherwise return the same ChemComp again.ChemicalComponentDictionary.getReplacer(ChemComp c) if ChemComp is replaced by another one, get the newer version otherwise return the same ChemComp again.booleanChemicalComponentDictionary.isReplaced(ChemComp c) booleanChemicalComponentDictionary.isReplacer(ChemComp c) voidChemCompConsumer.newChemComp(ChemComp c) voidMetalBondConsumer.newChemComp(ChemComp c) voidMMcifConsumer.newChemComp(ChemComp c) voidSimpleMMcifConsumer.newChemComp(ChemComp c) voidSimpleMMcifParser.triggerNewChemComp(ChemComp cc) -
Uses of ChemComp in org.biojava.nbio.structure.io.mmcif.chem
Methods in org.biojava.nbio.structure.io.mmcif.chem with parameters of type ChemCompModifier and TypeMethodDescriptionstatic CharacterChemCompTools.getOneLetterCode(ChemComp cc, ChemicalComponentDictionary dictionary) static final booleanChemCompTools.isStandardChemComp(ChemComp cc) -
Uses of ChemComp in org.biojava.nbio.structure.io.mmcif.model
Methods in org.biojava.nbio.structure.io.mmcif.model that return ChemCompModifier and TypeMethodDescriptionstatic ChemCompChemComp.getEmptyChemComp()Creates a new instance of the dummy empty ChemComp.Methods in org.biojava.nbio.structure.io.mmcif.model with parameters of type ChemComp