Package edu.msu.cme.rdp.classifier
Class ClassificationResult
- java.lang.Object
-
- edu.msu.cme.rdp.classifier.ClassificationResult
-
public class ClassificationResult extends java.lang.ObjectThis class holds the classification results for a query sequence.
-
-
Constructor Summary
Constructors Constructor Description ClassificationResult(edu.msu.cme.rdp.readseq.readers.Sequence p, boolean reverse, java.util.List<RankAssignment> a, HierarchyVersion version)Creates a new instance of ClassificationResult.
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.List<RankAssignment>getAssignments()Returns a list of RankAssignments.HierarchyVersiongetHierarchyTrainsetNo()Returns the version of the taxonomy hierarchy from of the training file.edu.msu.cme.rdp.readseq.readers.SequencegetSequence()Returns the query sequenceintgetTrainsetNo()Returns the training set number of the taxonomy hierarchy from of the training file.booleanisReverse()
-
-
-
Constructor Detail
-
ClassificationResult
public ClassificationResult(edu.msu.cme.rdp.readseq.readers.Sequence p, boolean reverse, java.util.List<RankAssignment> a, HierarchyVersion version)Creates a new instance of ClassificationResult. This class holds the classification results for a query sequence.
-
-
Method Detail
-
getSequence
public edu.msu.cme.rdp.readseq.readers.Sequence getSequence()
Returns the query sequence
-
getAssignments
public java.util.List<RankAssignment> getAssignments()
Returns a list of RankAssignments. The assignments are returned in the order of taxonomic ranks, from the highest to the lowest.
-
getTrainsetNo
public int getTrainsetNo()
Returns the training set number of the taxonomy hierarchy from of the training file.
-
getHierarchyTrainsetNo
public HierarchyVersion getHierarchyTrainsetNo()
Returns the version of the taxonomy hierarchy from of the training file.
-
isReverse
public boolean isReverse()
-
-