Package edu.msu.cme.rdp.classifier.comparison

Class ComparisonBrowserBean

java.lang.Object

edu.msu.cme.rdp.classifier.comparison.ComparisonBrowserBean

public class ComparisonBrowserBean
extends java.lang.Object

Constructor Summary

Constructors

Constructor	Description
ComparisonBrowserBean(java.lang.String hver, java.lang.String cver)

Method Summary

Modifier and Type	Method	Description
java.util.Iterator	getChildTaxonList()
java.lang.String	getClassifierVersion()
java.lang.String	getConfidence()
ComparisonBrowserNode	getCurrentBrowserRoot()
static float	getDefaultConfidence()
java.lang.String	getDepth()
java.util.Iterator	getDetailList()
int	getDetailListSize()
float	getFloatConfidence()
java.util.Iterator	getHierarchyTaxonList()
java.lang.String	getHierarchyVersion()
java.util.Iterator	getLineageList()
java.lang.String	getS1Filename()
int	getS1Total()
java.lang.String	getS2Filename()
int	getS2Total()
static int	getSeqCountLimit()
int	getSeqErrorCount()
java.util.Iterator	getSeqErrorList()
java.util.Date	getSubmitDate()
java.util.Iterator	getTabularTaxonList()
void	setConfidence(java.lang.String confidenceStr)
void	setCurrentRoot(java.lang.String tax)
void	setDepth(java.lang.String depthStr)
void	setRoot(ComparisonBrowserNode root)
void	setSeqErrorList(java.util.List errorList)
void	setSubmitDate(java.util.Date date)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ComparisonBrowserBean

public ComparisonBrowserBean(java.lang.String hver,
                             java.lang.String cver)

Method Detail

getSeqCountLimit

public static int getSeqCountLimit()

getDefaultConfidence

public static float getDefaultConfidence()

getSubmitDate

public java.util.Date getSubmitDate()

setSubmitDate

public void setSubmitDate(java.util.Date date)

getHierarchyVersion

public java.lang.String getHierarchyVersion()

getClassifierVersion

public java.lang.String getClassifierVersion()

getDepth

public java.lang.String getDepth()

setDepth

public void setDepth(java.lang.String depthStr)

getFloatConfidence

public float getFloatConfidence()

getS1Total

public int getS1Total()

getS2Total

public int getS2Total()

getS1Filename

public java.lang.String getS1Filename()

getS2Filename

public java.lang.String getS2Filename()

getConfidence

public java.lang.String getConfidence()

setConfidence

public void setConfidence(java.lang.String confidenceStr)

getSeqErrorCount

public int getSeqErrorCount()

getCurrentBrowserRoot

public ComparisonBrowserNode getCurrentBrowserRoot()

setCurrentRoot

public void setCurrentRoot(java.lang.String tax)

setRoot

public void setRoot(ComparisonBrowserNode root)

getLineageList

public java.util.Iterator getLineageList()

getTabularTaxonList

public java.util.Iterator getTabularTaxonList()

getChildTaxonList

public java.util.Iterator getChildTaxonList()

getHierarchyTaxonList

public java.util.Iterator getHierarchyTaxonList()

getDetailList

public java.util.Iterator getDetailList()

getDetailListSize

public int getDetailListSize()

setSeqErrorList

public void setSeqErrorList(java.util.List errorList)

getSeqErrorList

public java.util.Iterator getSeqErrorList()