Package edu.msu.cme.rdp.classifier.comparison

Class ComparisonCmd

java.lang.Object

edu.msu.cme.rdp.classifier.comparison.ComparisonCmd

public class ComparisonCmd
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	COMPARE_OUTFILE_DESC
static java.lang.String	COMPARE_OUTFILE_LONG_OPT
static java.lang.String	COMPARE_OUTFILE_SHORT_OPT
static java.lang.String	QUERYFILE_DESC
static java.lang.String	QUERYFILE1_LONG_OPT
static java.lang.String	QUERYFILE1_SHORT_OPT
static java.lang.String	QUERYFILE2_LONG_OPT
static java.lang.String	QUERYFILE2_SHORT_OPT

Constructor Summary

Constructors

Constructor	Description
ComparisonCmd(java.lang.String propfile, java.lang.String gene)	Creates a new Manager

Method Summary

Modifier and Type	Method	Description
void	doClassify(java.lang.String s1, java.lang.String s2, java.lang.String detailFile, java.lang.String sigFile, ClassificationResultFormatter.FORMAT format)	given the parser and root, calls the tester to do the classification
static void	main(java.lang.String[] args)
static void	printLicense()	Prints the license information to std err.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

QUERYFILE1_LONG_OPT

public static final java.lang.String QUERYFILE1_LONG_OPT

See Also:

Constant Field Values

QUERYFILE2_LONG_OPT

public static final java.lang.String QUERYFILE2_LONG_OPT

See Also:

Constant Field Values

COMPARE_OUTFILE_LONG_OPT

public static final java.lang.String COMPARE_OUTFILE_LONG_OPT

See Also:

Constant Field Values

QUERYFILE1_SHORT_OPT

public static final java.lang.String QUERYFILE1_SHORT_OPT

See Also:

Constant Field Values

QUERYFILE2_SHORT_OPT

public static final java.lang.String QUERYFILE2_SHORT_OPT

See Also:

Constant Field Values

COMPARE_OUTFILE_SHORT_OPT

public static final java.lang.String COMPARE_OUTFILE_SHORT_OPT

See Also:

Constant Field Values

QUERYFILE_DESC

public static final java.lang.String QUERYFILE_DESC

See Also:

Constant Field Values

COMPARE_OUTFILE_DESC

public static final java.lang.String COMPARE_OUTFILE_DESC

See Also:

Constant Field Values

Constructor Detail

ComparisonCmd

public ComparisonCmd(java.lang.String propfile,
                     java.lang.String gene)
              throws java.io.IOException,
                     TrainingDataException

Creates a new Manager

Throws:

java.io.IOException

TrainingDataException

Method Detail

doClassify

public void doClassify(java.lang.String s1,
                       java.lang.String s2,
                       java.lang.String detailFile,
                       java.lang.String sigFile,
                       ClassificationResultFormatter.FORMAT format)
                throws java.io.IOException

given the parser and root, calls the tester to do the classification

Throws:

java.io.IOException

printLicense

public static void printLicense()

Prints the license information to std err.

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

Throws:

java.lang.Exception