Package edu.msu.cme.rdp.classifier.train

Class Taxonomy

  • public class Taxonomy
extends java.lang.Object
    A Taxonomy holds the raw taxon information.

    • Constructor Summary

      Constructors 
      Constructor Description
      Taxonomy​(int id, java.lang.String name, int pid, int d, java.lang.String level)
      Creates a new instance of Taxonomy

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void changeRank​(java.lang.String s)  
      int getDepth()
      Returns the depth of the current taxon from root taxon.
      java.lang.String getHierLevel()
      Returns the hierarchy rank level.
      int getParentID()
      Returns the taxID of the parent taxon.
      int getTaxID()
      Returns the taxID.
      java.lang.String getTaxName()
      Returns the taxon name.
      void setDepth​(int d)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • Taxonomy

        public Taxonomy​(int id,
                java.lang.String name,
                int pid,
                int d,
                java.lang.String level)
        Creates a new instance of Taxonomy

    • Method Detail

      • getTaxID

        public int getTaxID()
        Returns the taxID.

      • getTaxName

        public java.lang.String getTaxName()
        Returns the taxon name.

      • getParentID

        public int getParentID()
        Returns the taxID of the parent taxon.

      • getDepth

        public int getDepth()
        Returns the depth of the current taxon from root taxon.

      • getHierLevel

        public java.lang.String getHierLevel()
        Returns the hierarchy rank level.

      • setDepth

        public void setDepth​(int d)

      • changeRank

        public void changeRank​(java.lang.String s)