Package edu.msu.cme.rdp.classifier.train.validation.leaveoneout

Class LeaveOneOutTesterMain

java.lang.Object

edu.msu.cme.rdp.classifier.train.validation.leaveoneout.LeaveOneOutTesterMain

public class LeaveOneOutTesterMain
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	HIDETAXON_SHORT_OPT
static java.lang.String	LENGTH_DESC
static java.lang.String	LENGTH_LONG_OPT
static java.lang.String	LENGTH_SHORT_OPT
static java.lang.String	OUTFILE_DESC
static java.lang.String	OUTFILE_LONG_OPT
static java.lang.String	OUTFILE_SHORT_OPT
static java.lang.String	QUERYFILE_DESC
static java.lang.String	QUERYFILE_LONG_OPT
static java.lang.String	QUERYFILE_SHORT_OPT
static java.lang.String	TRAIN_SEQFILE_DESC
static java.lang.String	TRAIN_SEQFILE_LONG_OPT
static java.lang.String	TRAIN_SEQFILE_SHORT_OPT
static java.lang.String	TRAIN_TAXONFILE_DESC
static java.lang.String	TRAIN_TAXONFILE_LONG_OPT
static java.lang.String	TRAIN_TAXONFILE_SHORT_OPT

Constructor Summary

Constructors

Constructor	Description
LeaveOneOutTesterMain(java.lang.String taxFile, java.lang.String trainseqFile, java.lang.String testFile, java.lang.String outFile, int numGoodBases, int min_bootstrap_words, boolean hideTaxon)	Creates a new Classification

Method Summary

Modifier and Type	Method	Description
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

QUERYFILE_LONG_OPT

public static final java.lang.String QUERYFILE_LONG_OPT

See Also:

Constant Field Values

OUTFILE_LONG_OPT

public static final java.lang.String OUTFILE_LONG_OPT

See Also:

Constant Field Values

TRAIN_SEQFILE_LONG_OPT

public static final java.lang.String TRAIN_SEQFILE_LONG_OPT

See Also:

Constant Field Values

TRAIN_TAXONFILE_LONG_OPT

public static final java.lang.String TRAIN_TAXONFILE_LONG_OPT

See Also:

Constant Field Values

LENGTH_LONG_OPT

public static final java.lang.String LENGTH_LONG_OPT

See Also:

Constant Field Values

QUERYFILE_SHORT_OPT

public static final java.lang.String QUERYFILE_SHORT_OPT

See Also:

Constant Field Values

OUTFILE_SHORT_OPT

public static final java.lang.String OUTFILE_SHORT_OPT

See Also:

Constant Field Values

TRAIN_SEQFILE_SHORT_OPT

public static final java.lang.String TRAIN_SEQFILE_SHORT_OPT

See Also:

Constant Field Values

TRAIN_TAXONFILE_SHORT_OPT

public static final java.lang.String TRAIN_TAXONFILE_SHORT_OPT

See Also:

Constant Field Values

LENGTH_SHORT_OPT

public static final java.lang.String LENGTH_SHORT_OPT

See Also:

Constant Field Values

HIDETAXON_SHORT_OPT

public static final java.lang.String HIDETAXON_SHORT_OPT

See Also:

Constant Field Values

TRAIN_SEQFILE_DESC

public static final java.lang.String TRAIN_SEQFILE_DESC

See Also:

Constant Field Values

TRAIN_TAXONFILE_DESC

public static final java.lang.String TRAIN_TAXONFILE_DESC

See Also:

Constant Field Values

LENGTH_DESC

public static final java.lang.String LENGTH_DESC

See Also:

Constant Field Values

QUERYFILE_DESC

public static final java.lang.String QUERYFILE_DESC

See Also:

Constant Field Values

OUTFILE_DESC

public static final java.lang.String OUTFILE_DESC

See Also:

Constant Field Values

Constructor Detail

LeaveOneOutTesterMain

public LeaveOneOutTesterMain(java.lang.String taxFile,
                             java.lang.String trainseqFile,
                             java.lang.String testFile,
                             java.lang.String outFile,
                             int numGoodBases,
                             int min_bootstrap_words,
                             boolean hideTaxon)
                      throws java.io.IOException

Creates a new Classification

Throws:

java.io.IOException

Method Detail

main

public static void main(java.lang.String[] args)
                 throws java.io.FileNotFoundException,
                        java.io.IOException

Throws:

java.io.FileNotFoundException

java.io.IOException