ClassifierTreeBuilder

java.lang.Object

edu.msu.cme.rdp.taxatree.utils.ClassifierTreeBuilder<E>

public class ClassifierTreeBuilder<E extends edu.msu.cme.rdp.taxatree.Taxon> extends Object

Nested Class Summary

Nested Classes

Modifier and Type

Class

Description

static interface

ClassifierTreeBuilder.ClassifierTaxonFactory<E extends edu.msu.cme.rdp.taxatree.Taxon>
Constructor Summary

Constructors

Constructor

Description

ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)

ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)

ClassifierTreeBuilder(E rootTaxon, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)

ClassifierTreeBuilder(E rootTaxon, List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
Method Summary

Modifier and Type

Method

Description

void

appendClassification(ClassificationResult classification)

void

appendClassifications(List<ClassificationResult> classifications)

edu.msu.cme.rdp.taxatree.ConcretRoot<E>

getRoot()

void

setIncSeqNodes(boolean b)

void

setTaxonFactory(ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- ClassifierTreeBuilder
  
  public ClassifierTreeBuilder(E rootTaxon, List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
- ClassifierTreeBuilder
  
  public ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
- ClassifierTreeBuilder
  
  public ClassifierTreeBuilder(E rootTaxon, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
- ClassifierTreeBuilder
  
  public ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
Method Details
- appendClassifications
  
  public void appendClassifications(List<ClassificationResult> classifications)
- appendClassification
  
  public void appendClassification(ClassificationResult classification)
- setIncSeqNodes
  
  public void setIncSeqNodes(boolean b)
- setTaxonFactory
  
  public void setTaxonFactory(ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
- getRoot
  
  public edu.msu.cme.rdp.taxatree.ConcretRoot<E> getRoot()